Molecular featurization for ML (100+ featurizers). ECFP, MACCS, descriptors, pretrained models (ChemBERTa), convert...
find ~/K-Dense-AI/ -name "*.skill"
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when...
This skill should be used at the start of any computationally intensive scientific task to detect and report...
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance...
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert...
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations...
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations,...
Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos,...
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for...
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL),...
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when...
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing...
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold...
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic...
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve...
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction,...
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties,...
Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically...
Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to...