AI & LLM

deepchem @K-Dense-AI

Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with...

datamol @K-Dense-AI

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery...

datacommons-client @K-Dense-AI

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use...

dask @K-Dense-AI

Distributed computing for larger-than-RAM pandas/NumPy workflows. Use when you need to scale existing pandas/NumPy...

cosmic-database @K-Dense-AI

Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene...

cobrapy @K-Dense-AI

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems...

clinvar-database @K-Dense-AI

Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity...

clinicaltrials-database @K-Dense-AI

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial...

citation-management @K-Dense-AI

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract...

cirq @K-Dense-AI

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits,...

chembl-database @K-Dense-AI

Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve...

cellxgene-census @K-Dense-AI

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues,...

biorxiv-database @K-Dense-AI

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences...

biopython @K-Dense-AI

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB),...

benchling-integration @K-Dense-AI

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API,...

anndata @K-Dense-AI

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with...

aeon @K-Dense-AI

This skill should be used for time series machine learning tasks including classification, regression, clustering,...

setup-timescaledb-hypertables @timescale

Step-by-step instructions for designing table schemas and setting up TimescaleDB with hypertables, indexes,...

migrate-postgres-tables-to-hypertables @timescale

Comprehensive guide for migrating PostgreSQL tables to TimescaleDB hypertables with optimal configuration and...

find-hypertable-candidates @timescale

Analyze an existing PostgreSQL database to identify tables that would benefit from conversion to TimescaleDB hypertables

design-postgres-tables @timescale

Comprehensive PostgreSQL-specific table design reference covering data types, indexing, constraints, performance...

pg-aiguide @timescale

MCP server and Claude plugin for Postgres skills and documentation. Helps AI coding tools generate better PostgreSQL code.

prompt-optimizer @hikanner

This skill should be used when users request help optimizing, improving, or refining their prompts or instructions...

dspy-simba-optimizer @OmidZamani

This skill should be used when the user asks to "optimize with SIMBA", "use Bayesian optimization", "optimize agents...