cat ~/Nouveau

pytdc @K-Dense-AI

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits,...

pysam @K-Dense-AI

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions,...

pyopenms @K-Dense-AI

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide...

pymoo @K-Dense-AI

Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks...

pymc-bayesian-modeling @K-Dense-AI

Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison,...

pymatgen @K-Dense-AI

Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project...

pylabrobot @K-Dense-AI

Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons,...

pyhealth @K-Dense-AI

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical...

pydicom @K-Dense-AI

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when...

pydeseq2 @K-Dense-AI

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR...

pufferlib @K-Dense-AI

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel...

pubmed-database @K-Dense-AI

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation...

pubchem-database @K-Dense-AI

Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties,...

protocolsio-integration @K-Dense-AI

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with...

pptx-posters @K-Dense-AI

Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user...

polars @K-Dense-AI

Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in...

plotly @K-Dense-AI

Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for...

perplexity-search @K-Dense-AI

Perform AI-powered web searches with real-time information using Perplexity models via LiteLLM and OpenRouter. This...

pennylane @K-Dense-AI

Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via...

peer-review @K-Dense-AI

Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with...

pdb-database @K-Dense-AI

Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates...

pathml @K-Dense-AI

Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed...

paper-2-web @K-Dense-AI

This skill should be used when converting academic papers into promotional and presentation formats including...

opentrons-integration @K-Dense-AI

Official Opentrons Protocol API for OT-2 and Flex robots. Use when writing protocols specifically for Opentrons...