cat ~/신규

hypogenic @jackspace

Automated hypothesis generation and testing using large language models. Use this skill when generating scientific...

histolab @jackspace

Digital pathology image processing toolkit for whole slide images (WSI). Use this skill when working with...

gtars @jackspace

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic...

gget @jackspace

CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases:...

geniml @jackspace

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for...

flowio @jackspace

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert...

etetoolkit @jackspace

Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy,...

esm @jackspace

Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across...

diffdock @jackspace

Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual...

denario @jackspace

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to...

deeptools @jackspace

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks),...

deepchem @jackspace

Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks,...

datamol @jackspace

Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug...

datacommons-client @jackspace

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use...

dask @jackspace

Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing,...

cobrapy @jackspace

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems...

cellxgene-census @jackspace

Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with...

bioservices @jackspace

Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL,...

biopython @jackspace

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence...

biomni @jackspace

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery,...

astropy @jackspace

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with...

arboreto @jackspace

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use...

anndata @jackspace

This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics...

aeon @jackspace

This skill should be used for time series machine learning tasks including classification, regression, clustering,...