SKILL.md for jira-snowflake-github workflow

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory...

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when...

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when...

Expert patterns for Segment Customer Data Platform including Analytics.js, server-side tracking, tracking plans with Protocols, identity resolution, destinations configuration, and data governance...

Automatically generate Excel reports from data sources including CSV, databases, or Python data structures. Supports data analysis reports, business reports, data export, and template-based report...

Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health...

Build resilient data ingestion pipelines from APIs. Use when creating scripts that fetch paginated data from external APIs (Twitter, exchanges, any REST API) and need to track progress, avoid...

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets...

Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

DuckDB CLI specialist for SQL analysis, data processing and file conversion. Use for SQL queries, CSV/Parquet/JSON analysis, database queries, or data conversion. Triggers on "duckdb", "sql",...

Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration...

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive...

This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities....

Cluster data using K-Means, DBSCAN, hierarchical clustering. Use for customer segmentation, pattern discovery, or data grouping.

Complete DataForSEO API integration for SEO data and analysis. Use when the user asks for keyword research, search volume, SERP analysis, backlink audits, competitor analysis, rank tracking,...

Use when you need to choose the right visualization for your data and question, then create a narrated report that highlights insights and recommends actions. Invoke when analyzing data for...