Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step...
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step...
This project is an attempt to make a website that has computer science high schoolers take a questionnaire to assess their specific computer science career field of interest and recommend free...
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
Manage cloud compute, bare metal, and Kubernetes on Vultr
Build WebGPU render and compute pipelines with portable best practices.
Intelligently organizes your files and folders across your computer by
Unified math capabilities - computation, solving, and explanation. I route to the right tool.
Unified math capabilities - computation, solving, and explanation. I route to the right tool.
Manage Google Cloud Platform resources, Compute Engine, and Cloud Run
Expert in JAX for high-performance numerical computing and machine learning
Best practices for NumPy array programming, numerical computing, and performance optimization in Python
Search bioRxiv biology preprints with natural language queries. Semantic search powered by Valyu.
Master Python optimization techniques, profiling, memory management, and high-performance computing