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Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.

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Analyzes errors, searches past solutions in memory, provides immediate fixes with code examples, and saves solutions for future reference. Use when user says "debug this", "fix this error", "why...

Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.

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Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step...

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis...

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting...

Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps...

Coordinate development workflows across multiple Git repositories with synchronized branching, batch commits, cross-repo operations, and monorepo-like workflows for microservices and multi-package...

Expert Git workflow management for Claude Code sessions with branch naming conventions, push retry logic, conflict resolution, and PR automation specifically designed for AI-assisted development workflows.

Triages GitHub issues by routing to oncall teams, applying labels, and closing questions. Use when processing new PyTorch issues or when asked to triage an issue.

Package entire code repositories into single AI-friendly files using Repomix. Capabilities include pack codebases with customizable include/exclude patterns, generate multiple output formats (XML,...

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain...

Download videos, audio, playlists, and channels from YouTube and 1000+ websites using yt-dlp. Supports quality selection, format conversion, subtitle download, playlist filtering, metadata...

This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference...

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