Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.

Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.

Nuxt SEO meta-module with robots, sitemap, og-image, schema-org. Use when configuring SEO, generating sitemaps, creating OG images, or adding structured data.

Nuxt SEO meta-module with robots, sitemap, og-image, schema-org. Use when configuring SEO, generating sitemaps, creating OG images, or adding structured data.

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.

Ingest data from S3 into bauplan using the Write-Audit-Publish pattern for safe data loading. Use when loading new data from S3, performing safe data ingestion, or when the user mentions WAP, data...

Analyzes codebases to generate comprehensive documentation including structure, languages, frameworks, dependencies, design patterns, and technical debt. Use when user says "analyze repository",...

Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.

Implement thread-safe code, mutexes, semaphores, async/await patterns, and concurrent data structures. Use when handling parallel operations, race conditions, or building high-performance...

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory...

Create or update AgentSkills. Use when designing, structuring, or packaging skills with scripts, references, and assets.

SKILL.md for jira-snowflake-github workflow

Meta-skill for extracting and creating reusable Claude Code skills from past work sessions. Analyzes git history, code patterns, workflows, and documentation to identify harvestable skills, then...

Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for...

Use when creating custom, interactive data visualizations with D3.js—building bar/line/scatter charts from scratch, creating network diagrams or geographic maps, binding changing data to visual...

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.

Create interactive data visualizations using Vega-Lite declarative JSON grammar. Supports 20+ chart types (bar, line, scatter, histogram, boxplot, grouped/stacked variations, etc.) via templates...

Provides guidance on organizing folder structures and file system layouts for any project. Use when planning project organization, reorganizing messy directories, setting up folder hierarchies,...