Apply STRIDE methodology to systematically identify threats. Use when analyzing system security, conducting threat modeling sessions, or creating security documentation.

Apply STRIDE methodology to systematically identify threats. Use when analyzing system security, conducting threat modeling sessions, or creating security documentation.

Analyze gaps between implementation plans and actual codebase implementation for the Rust self-learning memory project

问卷调查报告数据分析技能，支持自动选择分析模型、生成数据分析报告、评估旧方案并给出改进意见，最终生成HTML报告并在浏览器中打开

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML...

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use...

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory...

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This skill should be used when the user asks to "分析中国政策", "评估政策落地可能性", "判断政策执行力度", "预判政策走向", "解读政策文件", or needs systematic framework to analyze Chinese government policy implementation likelihood,...

WooYun漏洞分析专家系统。基于88,636个真实漏洞案例提炼的元思考方法论、测试流程、利用技巧、绕过方法。覆盖SQL注入、XSS、命令执行、逻辑漏洞、文件上传、未授权访问等主要漏洞类型。当用户进行漏洞挖掘、渗透测试、安全审计、代码审计时触发。

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis...

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations,...

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“Inspect a failed Bauplan pipeline run on a dev branch, reconstruct the frozen data state, collect evidence, propose a minimal code fix using Git, and rerun deterministically where possible.”

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Technical research methodology with YAGNI/KISS/DRY principles. Phases: scope definition, information gathering, analysis, synthesis, recommendation. Capabilities: technology evaluation,...

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.