NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks),...
AI & LLM
LLM integrations, prompt engineering, and AI orchestration
7,400 技能
Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks,...
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug...
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use...
Parallel/distributed computing. Scale pandas/NumPy beyond memory, parallel DataFrames/Arrays, multi-file processing,...
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems...
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with...
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL,...
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence...
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery,...
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with...
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use...
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics...
This skill should be used for time series machine learning tasks including classification, regression, clustering,...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with...
Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules...
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage...
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy...
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate...
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows,...
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API,...
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for...
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions,...
Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG...