This skill performs differential topologically associating domain (TAD) analysis using HiCExplorer's...
find ~/BIsnake2001/ -name "*.skill"
Performs data cleaning and removal operations. This skill takes a raw BAM and creates a new, "clean" BAM file by...
This skill performs chromatin loop detection from Hi-C .mcool files using cooltools.
This skill should be used when users need to identify topologically associating domains (TADs) from Hi-C data in...
This skill performs PCA-based A/B compartments calling on Hi-C .mcool datasets using pre-defined MCP tools from the...
Automatically detect and normalize Hi-C data. Only .cool or .mcool file is supported. All .mcool files are then...
This skill should be used when users need to infer chromatin states from histone modification ChIP-seq data using...
This skill identifies the locations of known transcription factor (TF) binding motifs within genomic regions such as...
This skill should be used when users need to perform known motif enrichment analysis on ChIP-seq, ATAC-seq, or other...
This skill identifies novel transcription factor binding motifs in the promoter regions of genes, or directly from...
Perform GO and KEGG functional enrichment using HOMER from genomic regions (BED/narrowPeak/broadPeak) or gene lists,...
This skill is used to perform genomic feature annotation and visualization for any file containing genomic region...