This pipeline performs genome-wide segmentation of CpG methylation profiles to identify Unmethylated Regions (UMRs),...
find ~/BIsnake2001/ -name "*.skill"
This skill performs chromatin loop detection from Hi-C .mcool files using cooltools.
This skill should be used when users need to perform known motif enrichment analysis on ChIP-seq, ATAC-seq, or other...
This skill performs genome-wide DNA methylation profiling. It supports single-sample and multi-sample workflows to...
This skill performs differential topologically associating domain (TAD) analysis using HiCExplorer's...
This skill performs PCA-based A/B compartments calling on Hi-C .mcool datasets using pre-defined MCP tools from the...
This skill provides a complete pipeline for integrating CpG methylation data with chromatin features such as...
This skill is used to perform genomic feature annotation and visualization for any file containing genomic region...
Performs data cleaning and removal operations. This skill takes a raw BAM and creates a new, "clean" BAM file by...
This skill identifies the locations of known transcription factor (TF) binding motifs within genomic regions such as...
This skill performs correlation analysis between differential methylation and differential gene expression,...
This skill performs differential DNA methylation analysis (DMRs and DMCs) between experimental conditions using WGBS...
Automatically detect and normalize Hi-C data. Only .cool or .mcool file is supported. All .mcool files are then...
This skill provides a complete and streamlined workflow for performing methylation variability and epigenetic...
This skill identifies novel transcription factor binding motifs in the promoter regions of genes, or directly from...
This skill should be used when users need to identify topologically associating domains (TADs) from Hi-C data in...
Calculates technical mapping statistics for any aligned BAM file (ChIP or ATAC). It assesses the performance of the...
Perform GO and KEGG functional enrichment using HOMER from genomic regions (BED/narrowPeak/broadPeak) or gene lists,...
This skill should be used when users need to infer chromatin states from histone modification ChIP-seq data using...
This skill analyzes the local DNA methylation profiles around target genomic regions provide by user. Use this skill...