AleDeclerk

loinc-hsc-panel

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# Install this skill:
npx skills add AleDeclerk/hsc-claude-skills --skill "loinc-hsc-panel"

Install specific skill from multi-skill repository

# Description

>

# SKILL.md


name: loinc-hsc-panel
description: >
Use correct LOINC codes for HSC (Hematopoietic Stem Cell) product lab orders, result validation,
and test panel configuration per FDA 21 CFR 1271.85 and FACT-JACIE standards. Trigger whenever
the user works on lab order generation (ORM^O01), lab result validation, clinical config for test
panels, LOINC code references in HL7 messages (OBR-4, OBX-3), CD34 counts, infectious disease
screening, donor testing, ABO/Rh typing, cell viability, sterility cultures, or any code mentioning
"LOINC", "lab panel", "test codes", "donor eligibility", or "HCT/P testing".


LOINC HSC Panel Skill

Provides verified LOINC codes for HSC product testing per FDA 21 CFR 1271.85 and ICCBBA/FACT standards.


HSC Product Test Panel β€” Complete LOINC Code Table

Cell Characterization (Product Quality)

LOINC Component Units Specimen Notes
42808-4 CD34 cells [#/volume] cells/uL Blood CD34+ count by flow cytometry
8125-7 CD34 cells/100 cells % Blood CD34+ fraction
80698-4 Viable CD34 cells/CD34 cells % HPC product CD34+ viability post-processing
26464-8 Leukocytes [#/volume] 10*3/uL Blood WBC count
26515-7 Platelets [#/volume] 10*3/uL Blood Platelet count
718-7 Hemoglobin [Mass/volume] g/dL Blood Hemoglobin
55793-4 Nucleated cells [#/volume] cells/uL Body fluid TNC count
34542-1 Cell viability [%] % Body fluid Trypan blue / 7-AAD

ABO/Rh Typing

LOINC Component Result Type Notes
882-1 ABO group [Type] Nominal (A/B/AB/O) ABO blood type
10331-7 Rh [Type] Nominal (Pos/Neg) RhD type
34532-2 Blood type and Indirect antibody screen panel Panel Comprehensive typing

Infectious Disease Screening (FDA 21 CFR 1271.85)

LOINC Component Method Required For Notes
62469-2 HIV 1+2 Ab+Ag 4th gen combo ALL HCT/P donors Preferred β€” replaces separate HIV-1/2
68961-2 HIV 1 Ab Rapid immunoassay ALL Alternative to combo
29893-5 HIV 1 Ab Standard immunoassay ALL Alternative to combo
30361-0 HIV 2 Ab Immunoassay ALL If not using combo test
5196-1 HIV 1 RNA [Presence] NAT ALL HIV nucleic acid test
5195-3 HBsAg [Presence] Immunoassay ALL Hepatitis B surface antigen
16933-4 HBc Ab [Presence] Immunoassay ALL Hep B core antibody (total)
42595-7 HBV DNA [Presence] NAT ALL HBV nucleic acid test
16128-1 HCV Ab [Presence] Immunoassay ALL Hepatitis C antibody
7905-3 HCV RNA [Presence] NAT ALL HCV nucleic acid test
22587-0 T. pallidum Ab Treponemal ALL Syphilis treponemal test
20507-0 Reagin Ab (RPR) Non-treponemal ALL Syphilis screen
22244-8 CMV IgG Ab Immunoassay Viable leukocyte-rich CMV IgG
5124-3 CMV IgM Ab Immunoassay Viable leukocyte-rich CMV IgM
7942-6 HTLV I/II Ab Immunoassay Viable leukocyte-rich HTLV screening

Sterility / Microbiology

LOINC Component Specimen Notes
630-4 Bacteria identified Blood culture Aerobic culture
635-3 Bacteria identified Body fluid culture Product sterility
580-1 Fungus identified Body fluid culture Fungal culture

All Valid LOINC Codes (Lookup Set)

Use this set to validate that a LOINC code is a recognized HSC panel code:

VALID_HSC_LOINC_CODES = {
    # Cell characterization
    "42808-4", "8125-7", "80698-4", "26464-8", "26515-7", "718-7", "55793-4", "34542-1",
    # ABO/Rh
    "882-1", "10331-7", "34532-2",
    # Infectious disease
    "62469-2", "68961-2", "29893-5", "30361-0", "5196-1",
    "5195-3", "16933-4", "42595-7",
    "16128-1", "7905-3",
    "22587-0", "20507-0",
    "22244-8", "5124-3",
    "7942-6",
    # Sterility
    "630-4", "635-3", "580-1",
}

For an HSC product, the minimum panel that satisfies FDA 21 CFR 1271.85 + FACT standards:

DEFAULT_HSC_PANEL = [
    # Product characterization
    {"code": "42808-4", "name": "CD34 cells [#/volume] in Blood"},
    {"code": "8125-7",  "name": "CD34 cells/100 cells in Blood"},
    {"code": "26464-8", "name": "Leukocytes [#/volume] in Blood"},
    {"code": "34542-1", "name": "Cell viability [%] in Body fluid"},
    # ABO/Rh
    {"code": "882-1",   "name": "ABO group [Type] in Blood"},
    {"code": "10331-7", "name": "Rh [Type] in Blood"},
    # Infectious disease (FDA-mandated)
    {"code": "62469-2", "name": "HIV 1+2 Ab+Ag [Presence] in Serum or Plasma"},
    {"code": "5195-3",  "name": "HBsAg [Presence] in Serum"},
    {"code": "16933-4", "name": "HBc Ab [Presence] in Serum"},
    {"code": "16128-1", "name": "HCV Ab [Presence] in Serum"},
    {"code": "22587-0", "name": "Treponema pallidum Ab [Presence] in Serum"},
    {"code": "22244-8", "name": "CMV IgG Ab [Mass/volume] in Serum"},
    {"code": "5124-3",  "name": "CMV IgM Ab [Presence] in Serum"},
    {"code": "7942-6",  "name": "HTLV I+II Ab [Presence] in Serum"},
    # Sterility
    {"code": "630-4",   "name": "Bacteria identified in Blood by Culture"},
]

This is 15 tests. The absolute minimum for FDA compliance is the 8 infectious disease codes + CD34 + viability = 10.


Reference Ranges

These are typical ranges. Actual ranges MUST be configured per-institution via clinical config with dual sign-off.

LOINC Test Typical Range Units Notes
42808-4 CD34+ count >=2.0 x 10^6/kg cells/uL (dose-calc) Minimum for engraftment
26464-8 WBC 4.5-11.0 10*3/uL Standard range
26515-7 Platelets 150-400 10*3/uL Standard range
34542-1 Cell viability >=70% % Post-thaw minimum
882-1 ABO group A, B, AB, or O Nominal Must be compatible with recipient
All ID tests Infectious disease Negative/Non-reactive Qualitative Reactive = escalation

HL7 Encoding

OBR-4 (Universal Service Identifier)

OBR|1|ORD12345||42808-4^CD34 cells [#/volume] in Blood^LN|||...

Format: LOINC_CODE^LOINC_LONG_NAME^LN

The third component MUST be LN (LOINC coding system identifier per HL7 Table 0396).

OBX-3 (Observation Identifier)

OBX|1|NM|42808-4^CD34 cells^LN||250|cells/uL||N|||F

Multiple Tests in One ORM^O01

Each LOINC code gets its own ORC+OBR group:

ORC|NW|ORD001|||...
OBR|1|ORD001||42808-4^CD34 cells^LN|||...
ORC|NW|ORD002|||...
OBR|2|ORD002||882-1^ABO group^LN|||...

Critical Bug: 58410-2 is NOT CD34

The code 58410-2 is "CBC panel - Blood by Automated count" β€” a complete blood count panel, not a CD34 count.

Code Actual Name What It Is
58410-2 CBC panel - Blood by Automated count Wrong β€” this is a CBC, not CD34
42808-4 CD34 cells [#/volume] in Blood Correct β€” CD34+ absolute count
8125-7 CD34 cells/100 cells in Blood Correct β€” CD34+ percentage

If you see 58410-2 labeled as "CD34+ count" anywhere in the codebase, it's a bug.


FDA Regulatory Context

21 CFR 1271.85 β€” Donor Testing Requirements

ALL HCT/P donors (including HSC) must be tested for:
- HIV-1 (antibody + NAT)
- HIV-2 (antibody; combo test acceptable)
- HBV (HBsAg + anti-HBc + NAT)
- HCV (antibody + NAT)
- Syphilis (T. pallidum β€” treponemal or non-treponemal)

Viable leukocyte-rich HCT/Ps (HSC products qualify) additionally require:
- CMV (IgG and IgM antibodies)
- HTLV-I/II (antibody)

A positive CMV does NOT make the donor ineligible β€” it must be communicated to the accepting physician.

FACT-JACIE Standards

  • All products must have ABO/Rh typing
  • Cell characterization (CD34, TNC, viability) required for product release
  • Sterility testing required for processed products

Known Bugs in Current Project Code

Bug 1: Wrong LOINC for CD34

File: src/agents/orchestration/nodes/order.py (line ~49)

# CURRENT (wrong):
loinc_codes = [
    {"code": "58410-2", "name": "CD34+ count"},    # WRONG! This is CBC panel
    {"code": "26515-7", "name": "Platelet count"},
]

# CORRECT:
loinc_codes = [
    {"code": "42808-4", "name": "CD34 cells [#/volume] in Blood"},
    {"code": "26515-7", "name": "Platelets [#/volume] in Blood"},
]

Bug 2: Default panel has only 2 tests

An HSC product requires minimum 10-15 tests (cell characterization + ABO/Rh + infectious disease + sterility). The default fallback should use DEFAULT_HSC_PANEL (15 tests) defined above.

Bug 3: No LOINC validation

File: src/services/config_service.py

The config service accepts arbitrary strings as LOINC codes without checking if they're valid. Should validate against VALID_HSC_LOINC_CODES.


Quick Reference Card

Question Answer
CD34 count LOINC? 42808-4 (absolute) or 8125-7 (percentage)
Is 58410-2 CD34? NO β€” it's CBC panel. This is a bug.
FDA-required ID tests? HIV, HBV, HCV, syphilis (all donors) + CMV, HTLV (viable leukocyte-rich)
Minimum tests for HSC? ~15 (4 cell char + 2 ABO/Rh + 8 infectious disease + 1 sterility)
HL7 coding system? LN (LOINC) in OBR-4 and OBX-3 third component
Result for ID tests? Qualitative: Negative/Non-reactive = pass; Reactive = escalation
CMV positive = reject? NO β€” communicate to accepting physician
Where are ranges configured? Clinical config (dual sign-off required)
LOINC validation set? VALID_HSC_LOINC_CODES (31 codes)

Reference Files

  • references/loinc_codes.md β€” Full LOINC code table with all fields
  • references/fda_requirements.md β€” FDA 21 CFR 1271.85 donor testing details
  • references/known_bugs.md β€” Current codebase bugs with fix patches

# Supported AI Coding Agents

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Learn more about the SKILL.md standard and how to use these skills with your preferred AI coding agent.