cat ~/New

matchms @K-Dense-AI

Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing...

markitdown @K-Dense-AI

Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with...

market-research-reports @K-Dense-AI

Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG,...

literature-review @K-Dense-AI

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv,...

latex-posters @K-Dense-AI

Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference...

latchbio-integration @K-Dense-AI

Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy...

lamindb @K-Dense-AI

This skill should be used when working with LaminDB, an open-source data framework for biology that makes data...

labarchive-integration @K-Dense-AI

Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate...

kegg-database @K-Dense-AI

Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug...

iso-13485-certification @K-Dense-AI

Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management...

hypothesis-generation @K-Dense-AI

Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to...

hypogenic @K-Dense-AI

Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically...

hmdb-database @K-Dense-AI

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties,...

histolab @K-Dense-AI

Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction,...

gwas-database @K-Dense-AI

Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve...

gtars @K-Dense-AI

High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic...

gget @K-Dense-AI

Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold...

get-available-resources @K-Dense-AI

This skill should be used at the start of any computationally intensive scientific task to detect and report...

geopandas @K-Dense-AI

Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when...

geo-database @K-Dense-AI

Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL),...

geniml @K-Dense-AI

This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for...

generate-image @K-Dense-AI

Generate or edit images using AI models (FLUX, Gemini). Use for general-purpose image generation including photos,...

gene-database @K-Dense-AI

Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations,...

fluidsim @K-Dense-AI

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations...