cat ~/New

brenda-database @K-Dense-AI

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism...

bioservices @K-Dense-AI

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG,...

biorxiv-database @K-Dense-AI

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences...

biopython @K-Dense-AI

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB),...

benchling-integration @K-Dense-AI

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API,...

astropy @K-Dense-AI

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with...

arboreto @K-Dense-AI

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use...

anndata @K-Dense-AI

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with...

alphafold-database @K-Dense-AI

Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files,...

aeon @K-Dense-AI

This skill should be used for time series machine learning tasks including classification, regression, clustering,...

adaptyv @K-Dense-AI

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing...

setup-timescaledb-hypertables @timescale

Step-by-step instructions for designing table schemas and setting up TimescaleDB with hypertables, indexes,...

migrate-postgres-tables-to-hypertables @timescale

Comprehensive guide for migrating PostgreSQL tables to TimescaleDB hypertables with optimal configuration and...

find-hypertable-candidates @timescale

Analyze an existing PostgreSQL database to identify tables that would benefit from conversion to TimescaleDB hypertables

design-postgres-tables @timescale

Comprehensive PostgreSQL-specific table design reference covering data types, indexing, constraints, performance...

pg-aiguide @timescale

MCP server and Claude plugin for Postgres skills and documentation. Helps AI coding tools generate better PostgreSQL code.

prompt-optimizer @hikanner

This skill should be used when users request help optimizing, improving, or refining their prompts or instructions...

dspy-simba-optimizer @OmidZamani

This skill should be used when the user asks to "optimize with SIMBA", "use Bayesian optimization", "optimize agents...

dspy-react-agent-builder @OmidZamani

This skill should be used when the user asks to "create a ReAct agent", "build an agent with tools", "implement...

dspy-output-refinement-constraints @OmidZamani

This skill should be used when the user asks to "refine DSPy outputs", "enforce constraints", "use dspy.Refine",...

dspy-debugging-observability @OmidZamani

This skill should be used when the user asks to "debug DSPy programs", "trace LLM calls", "monitor production DSPy",...

dspy-custom-module-design @OmidZamani

This skill should be used when the user asks to "create custom DSPy module", "design a DSPy module", "extend...

dspy-advanced-module-composition @OmidZamani

This skill should be used when the user asks to "compose DSPy modules", "use Ensemble optimizer", "combine multiple...

dspy-skills @OmidZamani

Collection of Claude Skills for DSPy framework - program language models, optimize prompts, and build RAG pipelines...