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pufferlib @K-Dense-AI

High-performance reinforcement learning framework optimized for speed and scale. Use when you need fast parallel...

pydeseq2 @K-Dense-AI

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR...

pydicom @K-Dense-AI

Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when...

pyhealth @K-Dense-AI

Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical...

pylabrobot @K-Dense-AI

Vendor-agnostic lab automation framework. Use when controlling multiple equipment types (Hamilton, Tecan, Opentrons,...

pymatgen @K-Dense-AI

Materials science toolkit. Crystal structures (CIF, POSCAR), phase diagrams, band structure, DOS, Materials Project...

pymc-bayesian-modeling @K-Dense-AI

Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison,...

pymoo @K-Dense-AI

Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks...

pyopenms @K-Dense-AI

Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide...

pysam @K-Dense-AI

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions,...

pytdc @K-Dense-AI

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits,...

pytorch-lightning @K-Dense-AI

Deep learning framework (PyTorch Lightning). Organize PyTorch code into LightningModules, configure Trainers for...

qiskit @K-Dense-AI

IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production...

qutip @K-Dense-AI

Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics,...

rdkit @K-Dense-AI

Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA),...

reactome-database @K-Dense-AI

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular...

research-grants @K-Dense-AI

Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review...

research-lookup @K-Dense-AI

Look up current research information using Perplexity Sonar Pro Search or Sonar Reasoning Pro models through...

rowan @K-Dense-AI

Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including...

scanpy @K-Dense-AI

Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction...

scholar-evaluation @K-Dense-AI

Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across...

scientific-brainstorming @K-Dense-AI

Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary...

scientific-critical-thinking @K-Dense-AI

Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases...

scientific-schematics @K-Dense-AI

Create publication-quality scientific diagrams using Nano Banana Pro AI with smart iterative refinement. Uses Gemini...