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scientific-slides @K-Dense-AI

Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference...

scientific-visualization @K-Dense-AI

Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel...

scientific-writing @K-Dense-AI

Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet...

scikit-bio @K-Dense-AI

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac),...

scikit-learn @K-Dense-AI

Machine learning in Python with scikit-learn. Use when working with supervised learning (classification,...

scikit-survival @K-Dense-AI

Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this...

scvi-tools @K-Dense-AI

Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer...

seaborn @K-Dense-AI

Statistical visualization with pandas integration. Use for quick exploration of distributions, relationships, and...

shap @K-Dense-AI

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining...

simpy @K-Dense-AI

Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems...

stable-baselines3 @K-Dense-AI

Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use...

statistical-analysis @K-Dense-AI

Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for...

statsmodels @K-Dense-AI

Statistical models library for Python. Use when you need specific model classes (OLS, GLM, mixed models, ARIMA) with...

string-database @K-Dense-AI

Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG...

sympy @K-Dense-AI

Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation...

torch-geometric @K-Dense-AI

Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs,...

torchdrug @K-Dense-AI

PyTorch-native graph neural networks for molecules and proteins. Use when building custom GNN architectures for drug...

transformers @K-Dense-AI

This skill should be used when working with pre-trained transformer models for natural language processing, computer...

treatment-plans @K-Dense-AI

Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties....

umap-learn @K-Dense-AI

UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing...

uniprot-database @K-Dense-AI

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python...

uspto-database @K-Dense-AI

Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions,...

vaex @K-Dense-AI

Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM....

venue-templates @K-Dense-AI

Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific...